On vacation, Linka goes to Washington D.C. to visit her cousin and uncle. Unfortunately, trouble isn't too far behind, because Verminous Skumm has brainwashed her cousin into taking a new drug called Bliss, and now Skumm wants to have Linka under his power as well.

People are collapsing in San Francisco with symptoms that suggest a whole range of pollution poisoning. As the Planeteers follow clues to solve this mystery, Ma-Ti (who is reading 1940s detective novels) keeps imagining himself as a private eye in black-and-white sequences. Ma-Ti proves a poor sleuth at first, but eventually he tracks down Verminous Skumm who is serving seafood tainted by storm drain runoff in his restaurant, The Sinking Ship.

The Planeteers are present for the testing of JASON, a robot that observes wildlife and the environment, and transmits the data to its home base. The tests are being done on the Galapagos Islands, which is where Hoggish Greedly, Verminous Skumm and his rats have crash landed, since their ship was thrown off course from a storm. Now, they're hungry, and consider feasting on tortoise eggs to fill their appetites. The Planeteers must fly to the Galapagos to save the eggs, and remove the rats from the environment to restore the balance of its ecosystem.

As key World leaders come together under one roof to discuss how to best prevent the growing spread of pollution and o-zone damage worldwide, Zarm returns to earth with a plot to snuff out the Planeteers. Calling a meeting of all the eco-warriors greatest foes, Zarm is able to tap into earth's energies and drain the earth itself of all it's resources. Only Gaia stands in his way, but Zarm has a final surprise to ensure she does not become a problem..

Zarm, having disabled Gaia and re-taken his position as spirit of the earth, begins turning the world into little more than a dead husk. With Gaia reduced to an old woman with not much longer to live, the Planeteers and Captain Planet face their greatest threat yet...

Venice's population is relocating due to its pollution and smog affecting the land and structures - but also because of a large mutated group of rats whose bites sicken their victims. The Planeteers arrive and meet a pathologist, Resa, attempting to find a cure for the disease they cause that her young relative Pietre is suffering, and learn through clues that Verminous Skumm is behind it. But it isn't until Ma-Ti is bitten, and badly suffers, that they learn that Skumm is doing it through a substance placed in processed cheese that causes the rats and whoever they attack to become infected by contaminated canal-water. Now they have to find a cure for the worsening patients and stop the rats from terrorizing the populace with the contamination they thrive on.

After watching too many B-rated cyborg and gang movies , Kwame falls asleep. Shortly after, the Planeteers are called to go on a mission, where they're sucked into a freak tornado. They are then attacked by robots and have to eject from the Geo-Cruiser, separating Kwame from the others. Kwame lands into a perfect world where trash is non-existent, and is camouflaged by garbage. Meanwhile, Blight and Skumm have taken over the world with vigilante robots and gangs, and have captured the other Planeteers. They are also turned into gang members, and threaten to reak havoc on the environment. Kwame, with the aid of a new friend, must come up with a way to convince his friends that violence is not in their hearts. Once everything is back on track, the tornado returns, and wakes Kwame from what was a nightmare. He turns on the news, only to discover that gangs and violence are not far from what happened in his dream if it continues....