Joy witnesses Sharon Myers stealing a bike and reports it to the principal. To Joy’s surprise, Principal Travis offers Sharon mercy instead of demanding justice. As Joy questions why Sharon shouldn’t be punished, Superbook transports her, Chris, and Gizmo to meet up with a prophet named Jonah. Jonah is running away from God because he doesn't think the people of Nineveh deserve God's mercy. Through Jonah's experiences, Joy realizes that mercy is a great gift to give as well as to receive.

Chris has a very precise plan for how he is going to get what he wants; and he can't handle it when things don't go according to his own plan. Superbook transports him back to ancient Egypt. As he watches Joseph rise from prisoner to governor of Egypt and gain a long lost bond with his brothers, Chris learns to forego his own plans and trust a little more in God's plans instead.

Chris wrestles with making a moral decision between right and wrong, a decision Joy warns could get him in big trouble. Superbook takes him and his friends back to Babylon during the reign of Nebuchadnezzar to meet Shadrach, Meshach, and Abednego, 3 men who chose to obey God and trust Him for their protection no matter the cost.

At school, Joy is not getting along with Becky (a new student). Suddenly, Superbook sends Joy, Chris, and Gizmo to a time where Israelite spies team up with Rahab. Joy learns that those who seem like enemies can get along and find common ground.

At school, Joy has to choose between standing up for Bonnie (a girl in a wheelchair) or going with the crowd. Suddenly, Superbook sends Joy, Chris, and Gizmo to a time when Queen Esther chooses to stand up for the Israelite people. This encourages Joy when she faces Janice and the Girls' Leadership Club.

When Chris is faced with a challenge between choosing to act truthfully or to take the easy and more "fun" pathway, Superbook whisks the kids back to meet John the Baptizer. During an exciting journey that takes the kids from witnessing John preach and baptize on the Jordan River, all the way through to his incarceration and ultimate death at the hands of Herodias and King Herod, Chris comes to understand what it means to live truthfully and point others toward in the direction of being more like Jesus. When Chris returns home, he applies what he's learned. Although it doesn't change the boy he is trying to help, Chris himself is that much stronger, for the effort he's putting in and for the experience of meeting John the Baptizer firsthand.

After a disaster in South America, Joy has to choose between finishing her mission or giving up. Suddenly, Superbook sends Joy, Chris, and Gizmo to a time when Paul chooses to focus on his mission, no matter the circumstances. This encourages Joy when she returns to face her relief project.

During the worst week of his life, Chris loses his grandpa. He feels as if he cannot go on. He wants to give up on doing what is right. Suddenly, Superbook sends Chris, Joy, and Gizmo to a time when Job is tested by God.

When Gizmo catches Chris and Joy skipping school to hang out with a bad role model (Pearce, the leader of an extreme skateboarding team), Superbook sends them back to a time when the world was fraught with evil. So evil, in fact, that God vows to destroy the world, saving only Noah "The only righteous man on earth", his family and a menagerie of animal species. As they witness the Flood, and Noah's unwavering faith in God, our heroes see how their bad behavior paralleled the world's descent into sin. Heartened by Noah's example and God's covenant with Mankind to never again destroy the world with a flood, they return to the present and reject Pearce's dangerous influence.

When Joy is called to leadership in a difficult situation, she has to choose between taking the challenge or running scared. Superbook sends Joy, Chris, and Gizmo to a time when Gideon overcomes a difficult battle with the Midianites. This adventure encourages Joy to walk with God and conquer the task at hand.

Chris is desperate to play with some of the cooler kids in school in an afternoon pick-up basketball game. Just as he demonstrates his Quantum Corkscrew jump shot, Joy runs in to excitedly announce that she's been elected Chess Club President. Realizing how "uncool" that sounds to the guys he's trying to impress, Chris pretends he doesn't know her. Gizmo promptly arrives with Chris' sneakers, but there will be no game for him today. Instead, Superbook sends the trio back in time to meet the disciple Peter, who ends up denying Jesus three times. Later, after seeing the risen Jesus forgive Peter on the shores of Galilee, Chris realizes that like Peter, he was acting out of fear when he refused to acknowledge Joy's friendship. Once the kids return to the present, Chris takes a pass on the pick-up game and heads off with his true friends to celebrate Joy's accomplishment.

Chris is hooked on becoming the most powerful “god” in the online 3D game, “Battleverse of the Gods!" Suddenly, Superbook sends them to a time when Elijah battles the prophets of Baal. He shows the believers of Baal that there is only one true God.