As the Clone Wars sweep through the galaxy, the heroic Jedi Knights struggle to maintain order and restore peace. More and more systems are falling prey to the forces of the dark side as the Galactic Republic slips further and further under the sway of the Separatists and their never-ending droid army. Anakin Skywalker and his Padawan learner Ahsoka Tano find themselves on a mission with far-reaching consequences, one that brings them face-to-face with crime lord Jabba the Hutt. But Count Dooku and his sinister agents, including the nefarious Asajj Ventress, will stop at nothing to ensure that Anakin and Ahsoka fail at their quest. Meanwhile, on the front lines of the Clone Wars, Obi-Wan Kenobi and Master Yoda lead the massive clone army in a valiant effort to resist the forces of the dark side.

Jedi Master Yoda and three clone troopers -- Jek, Thire, and Rys -- must face off against Count Dooku's dreaded assassin Ventress and her massive droid army to prove the Jedi are strong enough to protect a strategic planet and forge a treaty for the Republic.

An attack by a devastating new Separatist weapon -- the powerful starship Malevolence -- leaves Jedi Master Plo Koon and his clone troopers struggling to survive until Anakin and Ahsoka can find them.

With the help of his Padawan Ahsoka and Jedi Master Plo Koon, Anakin utilizes new long-range Y-wing bombers to lead a bold strike on General Grievous' warship, the Malevolence, and its destructive weapon.

Alone on a distant outpost, clone officers Rex and Cody must inspire their rookie unit to believe in themselves to stave off a droid commando invasion.

On a diplomatic mission to the planet Rodia, Padmé; discovers that her old friend and fellow Republic senator Onaconda Farr has allied his planet with the Separatists. In exchange for food and resources for his people, Onaconda captures Padmé and promises to deliver her to the Nute Gunray. Sensing Padmé is in trouble, Jar Jar Binks disguises himself as a Jedi, and with the help of C-3PO, courageously fights to rescue his friend and fellow senator.

Arriving on the desolate ice world of Orto Plutonia, Anakin Skywalker and Obi-Wan Kenobi investigate the disappearance of a clone security force stationed on a remote outpost. The Jedi, accompanied by Senator Riyo Chuchi and Chairman Cho of the nearby moon of Pantora, soon discover their clone troopers were attacked by a tribe of furry natives known as the Talz. Fierce beast-riding warriors, the Talz are very territorial and only want to be left alone. The Jedi manage to negotiate peace with the Talz chieftain, Thi-Sen, when greedy Chairman Cho breaks it by insisting the planet and the Talz are under his power. The resulting conflict escalates into war between the senator led clones and the Talz, with the Jedi in the middle.

Per Palpatine's order, Republic forces transport a fearsome Zillo Beast back to Coruscant for scientific study. Eager to extract the beast's secrets for military gain, Palpatine orders his lead scientist to examine, and subsequently, kill the monster. Filled with pain and anger, the Zillo Beast escapes from the lab and begins devastating the city. Soon, Anakin, Padmé, and Palpatine find themselves pursued by the beast while the Jedi fight to contain it.

Ryloth is under siege. Trapped on the surface, Jedi Master Di rallies the local forces with the help of Cham Syndulla. Desperate to save them, the Jedi Council dispatches Senator Bail Organa and Representative Jar Jar Binks to the planet Toydaria, where they are to convince the neutral regent, King Katuunko, to send aid to Ryloth. Bail and Jar Jar must convince Toydaria that their cause is just -- before it's too late. Trade Federation envoy Lott Dod attempts to prevent the Toydarians from giving up their neutrality. Katuunko follows his conscience and secretly aids the Republic, which Jar Jar is able to keep secret from the snooping Trade Federation agents with his inimitable distractions.