Which episodes do you think really took advantage of the premise? I'm referring to the idea of a stranded ship with a mixed crew. The best test I can think of is to think about whether it could just as easily be an episode of TOS/TNG. These are the episodes that meet the criteria as far as I can tell.

SEASON 1 Caretaker parts 1 & 2 Eye of the Needle Prime Factors Learning Curve

SEASON 2 Cold Fire Maneuvers Alliances Dreadnought Investigations Basics part 1

SEASON 3 Basics part 2 Displaced Scorpion part 1

SEASON 4 Scorpion part 2 Year Of Hell parts 1 & 2 Message In A Bottle The Killing Game parts 1 & 2 Hope And Fear

SEASON 5 Night Timeless Counterpoint Dark Frontier parts 1 & 2 Course: Oblivion Equinox part 1

SEASON 6 Equinox part 2 Live Fast And Prosper

SEASON 7 The Void Workforce parts 1 & 2 Endgame parts 1 & 2

Some of these episodes are only tenuously tied to the premise and there are some other episodes that could be said to utilize the premise that I left out.