The movie starts with the first years of Mamoru Endou at Raimon. The first half of the movie shows what happened during the Football Frontier, until the finals match being with Ogre instead of Zeus. With most of the members injured, they almost lost hope, until Kanon introduces himself as Mamoru's great-grandson, and other friends from the near future (Fubuki, Toramaru, Hiroto, Tobitaka, and Fidio) showed up to help them. With the added strength and after a great match, they are able to defeat Team Ogre.

The Raimon team has been invited by Fifth Sector strangely to a soccer camp. When they agree, things go out of hand since it was revealed that Fifth Sector wants to eliminate them once and for all in the island called God Eden. Now, the Raimon team needs to train harder, to be able to show that they have the strength to fight back and prove Fifth Sector's doings wrong.

As Shinsei Inazuma Japan was about to have a match with Inazuma Legend Japan, a mysterious attack of a person and a swarm of robots interrupted, and another mysterious girl's power drove the world into another dimension. As the world of Inazuma Eleven Go and Danball Senki W met, the two teams must work together to find out what happened to their worlds.

A Live Action Performance was done based on the first part of the anime up until Raimon beat Teikoku for the first time. The plot of the Live Action Performance follows how the match of Raimon and Teikoku Gakuen ended. It also shows the hissatsu techniques.