Историята започва десет години преди събитията в първия "Стар Трек" с екипажът на "Откритие", който открива нови светове и цивилизации. Сюжетът се върти около инцидент и събитие в историята на "Стар Трек", за което е споменавано, но никога не е навлизано в подробности.
New CE 2012. the mysterious organization Vagras aims to threaten the city by stealing the Enetron which is a new power source supporting people’s life. It's up to the Go-Busters to protect the city alongside their partners, the Buddyroids.
A future war has raged for decades between the few human survivors and an endless army of machines. 1997: the AI known as Skynet gained self-awareness and began its war against humanity. Caught between the future and this past is a soldier sent back in time to change the fate of humanity.