불길한 혜성 레파루스의 인도에 의해, 황금사과에 봉인되고 있던 불화의 여신 에리스가 세이야가 자란 고아원인 별의 아이 학원의 소녀·아이자와 에리의 육체에 빙의 해 지상에 강림했다. 아테나의 힘을 빼앗아 완전 부활하려 하는 에리스를 저지하고 아테나를 구출하기 위해 출동한 세이야들을 에리스의 힘으로 부활한 고스트 세인트들이 가로막는다.

In Siberia, Hyōga saves a man that is being attacked. Injured, the man manages only to say something about Asgard. Some days later, Saori, Seiya, Shiryū and Shun are wondering about Hyōga and decide to go to Asgard to investigate. At Valhalla, the Lord of Asgard, Dolbar, says he has not heard of any Hyōga and neither has his right hand, Loki. However, at all times Seiya and the others can feel an evil cosmo emanating from Loki and the other Odin Saints called God Warriors. Shiryū, in particular, notices a familiar cosmo coming from Midgard, a mysterious, masked God Warrior. Dolbar makes it clear that he is trying to take control of both Asgard and the Sanctuary, imprisoning Athena in a strange dimension within the giant statue of Odin. Midgard reveals himself as Hyōga and tries to kill Shiryū to prove himself to Dolbar. Thus, it is the task of the Bronze Saints to defeat Dolbar, Loki and the rest of the God Warriors, to save Athena and Hyōga.

Athena receives the visit of Phoebus Abel, her older brother and God of the Corona. He informs her that he has come to destroy humanity as punishment for their corruption, just as it was done in ancient times. He dismisses Seiya and the Bronze Saints, as she will now be guarded by Abel's three Corona Saints, Atlas of Carina, Jaow of Lynx and Berenike of Coma Berenices, and the five resurrected Gold Saints who died in the Sanctuary battle: Saga of Gemini, Deathmask of Cancer, Shura of Capricorn, Camus of Aquarius and Aphrodite of Pisces. When Athena rebels against Abel's plan, he attacks her, sending her soul to Elysion, the final resting place from which there is no return. The Bronze Saints immediately rush to the Sanctuary to save her and ultimately overcome Abel.

The plot involves the coming of Lucifer to the Sanctuary, where his underlings systematically dispose of the surviving Gold Saints. Athena goes to Lucifer to ask for peace, placing herself in peril. The Bronze Saints must then come to her rescue, destroying Lucifer's Fallen Angels (Seima Tenshi in Japanese) in the process.

After the bloody battle against Hades, the goddess Athena and her saints are still recovering when they find themselves face to face with their newest and most formidable foe: the dreadful moon goddess Artemis. Artemis replaces Athena as the earth guardian deity and takes over the Sanctuary, turning Athena's Saints into her servants. Upon invading the Sanctuary, the Bronze Saints learn that Athena was banished by Artemis and decide to fight the moon goddess in order to rescue their true goddess and free the Earth from Artemis's ominous control.

`성역 십이궁 편`을 바탕으로 스스로의 운명과 사명에 농락당하는 소녀 사오리와 그녀를 지키기 성시들의 젊은 청동 세인트 (청동 세인트)들의 사투를 그린다.