April. A second year high school student, Arato had a normal life he spent with his friends Ryo and Kengo. Until that night. On his way home from shopping, Arato is attacked by a corrupted hIE, but a beautiful hIE named Lacia comes to his rescue.

After binding an owner contract with Arato, Lacia has come to live with the Endo's. Arato's sister Yuka has completely accepted Lacia, and even enters her into an hIE modeling audition. Meanwhile, Arato can't hide his apprehension with living with someone who looks to be a beautiful girl his own age.

Despite his awareness of analog hacking, Arato can't help himself from being drawn to Lacia. Amid all of this, Lacia is "kidnapped" right in front of Yuka. Arato is upset with the police and their unwillingness to treat this as anything but property theft, so he gets the help of Ryo and Kengo to investigate on their own.

Arato arrives at the industrial promotion center which is the target for the antibody network's terrorist attack. He heads up the stairs and sees the android politician Mikoto his father developed, which leaves him with feelings of uneasiness. Soon after, the terrorist unit led by Kouka as well as another Lacia-class hIE arrive on the scene. A big battle is about to break out!

It has been two months since the tragic events in Mitaka. The world returned to some semblance of normalcy, and Arato and Lacia lay low as they prepare for whatever may come next. However, their brief period of happiness is disturbed after they are contacted by the super intelligent AI Astraia.

Super intelligent AI have spurred society to change. As the fight surrounding Arato and Lacia escalates, the leaders of the old guard discuss how they could maximize their own profits. Among the participants, only Erika Burrows expresses anger towards their foolishness.