Having given up on life, 15-year-old Chise Hatori sells herself at an underground auction, where she is bought by Elias Ainsworth, a not-quite-human mage, for 5 million pounds. She learns that he intends for her to be his future bride, and her world begins to change.

Few people know the truth about the bookstore on the outskirts of London that Elias frequents. He takes Chise there, where they meet Angelica, who teaches Chise a little bit of magic, but... The true power of the Sleigh Beggy materializes a fragment of Chise's memories.

Simon, who is assigned by the Church to keep an eye on Elias, visits with some business. One of his requests brings Chise and Elias to the ends of the earth, where they meet Elias' mentor, Lindel, along with an old race on the verge of extinction. An old one, about to return to the earth, spends his last moments sharing a dream with Chise.

To sorcerer Refnred's eyes, Chise is a sad girl, being duped by a mage. But no matter what Elias' true motives are, Chise has no intention of leaving him. Elias was the first person to value her, after all. As she walks towards the epicenter, she learns of the truth behind it. The sight of a boy appears behind the tragedy.

With the church's requests fulfilled, things were supposed to go back to normal. But Elias has been acting strange since the last request: he'd vanished on the first morning after Chise had spent a night in his room. Neither Angelica's kind words nor Ruth's pure words are enough to put Chise's mind to rest.

Elias, is an odd failure who pretends to be human -- but is it because of his master's words, or because of his distrust for humans, that he stopped communicating about himself? Lindel's alias, Echoes, refers to the to a song akin to the sound of snowmelt, traveling through the wind, causing the blooming of flowers and the dancing of fairies. The magic of the song turns into a mirror the surface of the water Chise peers into. What does she see beyond the mirror?

With Chise being transformed into a fox, she takes off running into the woods. Elias chases after her. Later, Chise is visited by the Leanan sídhe, who is attached to Joel, claiming that Joel will not wake up.

With King Oberon taking Chise into the Fairy realm for recovery, Silke becomes agitated waiting at home. Chise slowly recovers under Dr. Shanon's care, a fairy that was raised as a human.

As the dragon rampages, Elias tells Chise they must absorb the dragon’s magic in order to stop it. This leaves Chise in a predicament as Elias becomes unable to help.

Elias and Chise attend Mariel’s coven meeting and meet Phyllis, Mariel’s high priestess. Secretly, Elias is given information that could help Chise. Following the meeting, Chise becomes suspicious of Elias' activities.

Elias earns the help of many, and they form a search party for Chise. Meanwhile, Chise and Cartaphilus relive his past together.

Cartaphilus and Chise argue over their respective approaches to dealing with their own suffering, beating each other up brutally in the process.