The crew of a lone naval ship try to save humanity when they discover a deadly virus has wiped out most of the population in the series premiere of this drama.

The crew members arrive at the Guantanamo Bay military base to collect food, fuel and medical supplies. When they come under attack by escaped Gitmo prisoners, they team up with a gruff private contractor to push back against the offensive.

The crew faces a new foe targeting Rachel and her research, leading Chandler to engage in a series of dangerous strategic maneuvers.

Chandler's leadership is put to the test when the ship's propulsion system is in danger of breaking down, the crew becomes overworked and exhausted, and Dr. Scott could potentially lose all of her research on the virus.

With Rachel close to a breakthrough on her vaccine, she, Chandler and XO Slattery lead a small team into the jungles of Nicaragua on a mission to find monkeys for her vaccine trials. While there, they find much more than they bargained for when they run across a former drug kingpin who will stop at nothing to maintain his stranglehold on his oppressed society. Chandler and his men find themselves in a huge moral dilemma over whether to eliminate this menace or take what they need and continue on with their mission.

After returning from the horrors of Nicaragua, panic begins to spread throughout the ship when Lt. Danny Green comes down with a mysterious illness that could be the virus. Losing faith in Rachel and her failing vaccine trials, Chandler now has to deal with a restive crew. If he fails to keep the crew together, the whole mission is in jeopardy.

After picking up a distress call near Jamaica, Chandler and a small team stage a rescue attempt. But a surprise attack leave Chandler and Tex stranded at sea. Slattery and the crew search desperately to find their lost at sea Captain and his comrade, hoping to do so before their enemies beat them to it.

With Chandler and Tex caught in a dangerous situation, Slattery has to step into the role as commanding officer. Torn between a mission with the fate of the world at stake and a Captain (and friend) in danger, Slattery has to find a way to get his people back without losing the most important asset: the vaccine prototype.

Rachel and Chandler ask for six volunteers to participate in human trials of her vaccine, but the tests could be a living hell as the virus and the vaccine do battle inside their bodies. Meanwhile back in the States, Chandler’s wife and father are doing everything they can to keep their family alive.

Chandler and his crew finally returns home, where a former D.C. power player is fending off a dangerous warlord who threatens her hopes of restoring law and order in society. Now with a location and a means to finalize their mission, Chandler sets out to save his dying family, only to discover something absolutely terrifying about this brave new world.

CNO Tom Chandler is sent to Asia to investigate a possible mutation of the Red Flu. Captain Slattery and his crew deliver cure to Southeast Asia but there may be an unexpected threat in the region.

Chandler must find a way to return to his old crew and investigate a dangerous new foe.

Chandler and crew race to find answers in an Asian Dodge City. Slattery begins to unravel the truth about his troubling predicament.

Chandler must confront his suspected new foe. Slattery learns more about the supposed virus mutation. Pressure mounts on President Michener as the situation worsens.

Chandler's mission becomes complicated as his position is worsened. President Michener faces pressure from the regional leaders.

Chandler's mission comes to a head as he prepares the final part of his plan. President Michener ponders the fate of his presidency.

The Nathan James must evade an overwhelming threat. A revelation in St. Louis puts President Michener in a terrible position.

America copes with tragedy while Chandler further investigates the possible virus mutation.

Chandler gets a lead that could help answer threatening questions. Kara does some digging in the White House.

Chandler finds himself making a difficult decision when an order comes in from the White House.

Chandler faces his powerful enemy in a final showdown. Kara joins someone that can help with her mission.

Chandler returns to America to find out what has really been happening.

The fight for America comes to an end; Chandler faces a challenge that could change his life forever.