When a Lunar Module is attacked by a UFO, Straker makes a split-second decision that endangers the astronauts, but ultimately saves them. Later, he is surprised to find his authority being questioned by his most loyal officer, Colonel Paul Foster, who spearheads a campaign against him. Then an attempt is made on Straker's life...

A Naval vessel shoots down a UFO in the Atlantic, but the Admiralty rejects further investigation into the incident. Straker suspects a cover up and wants to know why, so Foster courts Admiral Sheringham's secretary, Sarah Bosanquet. What they discover could mean the end of all life on Earth...

After a UFO inexplicably destroys itself less than two miles from Moonbase, a mysterious crystal rock is recovered, and it causes the person in its vicinity to hallucinate. The man on Moonbase who found it thinks Mexican bandits have taken over Moonbase. It gets transferred to Straker's office, and he hallucinates that SHADO is simply a set for a TV series, he is an actor named Mr. Burns, Moonbase can be reached by stepping through two doors from the main control room at SHADO HQ, and "Mr. Straker" is not available. Straker breaks the hallucination by jumping in on the scene while the "character" Gen. Henderson is doing a close-up of the line they were doing when the hallucination began.

While picking up Lt. Lake at the airport, Straker and Lake find that time has been frozen except for them. Sawdust hangs in mid-air, Lt. Ellis is frozen mid-word on a viewscreen, and one man is taunting them, apparently working for the aliens.

A flashback episode in which Straker recalls his marriage, followed by stormy days as he must work covertly to get SHADO up and running and recruit personnel. All this leaves his wife angry at his absence, suspicious at the things he might be doing (her father photographs Straker meeting a woman in a parking garage, a woman who will be working at SHADO). In the end, she gives birth to their son.