An experimental Naval aircraft crashes on Oahu, and Tennant and her team must find who is behind it before classified state secrets are exposed.

Tennant and NCIS must take down a notorious team of international thieves using WWII explosives on armored trucks before they complete their final big job and disappear. Also, Kai searches for a new place to live; Lucy and Whistler have a standoff about their previous encounter; and Ernie's mission in the field is more alarming than he expected.

When a marine is shot, the team investigates. They start by talking to him, he tells them that he went riding and he got shot probably by a hunter. They check out his story and learn he wasn't telling the truth. They go back to see him but he left the hospital, not fully healed. They learn a relative came and helped him. They see the relative, who doesn't know much but they find a bag filled with drugs. They think the bag belongs to his son. So they try to talk to him but he disappeared. They think the boy was asked by a drug ring to deliver the drugs but he changed his mind which means his father is trying to protect him. But the gang will stop at nothing to get them, so they try to find them. When Kai's father doesn't see his doctor, Kai needs to put aside his feelings to help his father.

Following a close call at a meth lab explosion, the NCIS team learns Kai is being targeted by his old friend-turned-criminal and must take him down; Lucy gets her first big case aboard her aircraft carrier.

When a Navy deserter accidentally comes out of hiding, his family becomes a target that drives the NCIS team and Charlie 1 to investigate who is after them. Meanwhile, Lucy surprises the team by returning to Hawai'i from her agent afloat job early.

When a Navy pilot is found murdered at a local military resort, the team goes undercover to discover a criminal enterprise hiding in plain sight.