Sarada is in shock after Sakura is captured by Shin's jutsu. Even Naruto, with his exceptional tracking skills, is unable to locate her. Then Sasuke discovers countless Sharingan embedded in Shin's arm. Following clues gleaned from Shin's arm, they come upon the laboratory of the heinous Hidden Leaf criminal, Orochimaru, who has been conducting research on Forbidden Jutsu. There, Sarada meets her father's former partners Suigetsu Hozuki and Jugo. She then asks Suigetsu to look into who her real mother is.

Team 7 sets out on their first mission. Their client is a village who has been plagued by bandits, and their mission is to eradicate them. They meet Kiri, a young girl who has just been installed as the village head after her father's sudden death. The team soon realizes that this mission is far more dangerous and complicated than first expected.

Boruto overhears remarks being made about his father and him, adding to the hurt because Naruto has broken his promise to be home for Boruto's birthday. Shortly after, Team 7 is given a mission to capture a gang of thieves targeting the Thunder Train, who are hiding out in a town near the Land of Fire's border. But when Team 7 arrives at the town, they find something is not quite right with one of the captured thieves.