Boruto and his classmates are invited to tour the Hidden Mist Academy under Kagura and Chojuro's escort. The Hidden Mist emphasizes swordsmanship, and Boruto is awed by their intense training sessions. Chojuro sees Boruto's interest and arranges a sparring match with Kagura, who seems hesitant. Kagura is extremely skilled and has been asked by Chojuro to become the successor to his Great Twin Sword, Hiramekarei, but he has declined.

Kagura unlocks the storeroom to let Shizuma take the Mist Blades. The New Seven Ninja Swordsmen begin an insurrection, the end goal being to turn their village back into the Blood Mist Village! News of the rebellion reaches Chojuro and Mei, the current and previous Mizukage. They are determined to execute the perpetrators, along with Kagura, who aided them. In order to change Chojuro's mind, Boruto makes an astonishing announcement.

It is time for the graduation exams. Boruto and the others complete the first-round written exam and move on to the next. The second round has the students facing off against Kakashi—the previous Sixth Hokage—and the academy instructors in actual combat situations. With the goal to "steal the bell" from Kakashi, every student rushes into action. However, the going is rough against Kakashi and the teachers who guard him. Somehow, Boruto reaches Kakashi first, but the Sixth Hokage shows no mercy. After a tough fight, he coldly tells Boruto that he's not suited to become a ninja!

During the protests, the Byakuya Gang attacks Katasuke's research center, which has been developing new technology for Scientific Ninja Tools. Shikadai figures out what the Byakuya Gang's goal is and rushes after them in pursuit with Boruto close by. Even a weak "pawn" can become strong in one move—what are the two friends who bonded through shogi seeking?

Team 7 enters the mine where the thieves had been hiding out, only to be attacked by a powerful, strange-looking White Zetsu. They find out the mine connects to a ruin belonging to Kaguya Otsutsuki. Team 7 decides to investigate and engage the White Zetsu. As they proceed deeper and deeper into the mine, they make a shocking discovery!

Round two of the Chunin Exams begins. For the second test, three-man teams must try to capture their rival team’s flags. Sarada and Mitsuki set out for enemy territory while Boruto stays behind to guard their flag. The Senka Triplets from the Hidden Mist attack, and Boruto finds himself in trouble. Boruto considers using the Scientific Ninja Tool that Katasuke gave him, but it's prohibited to do so during the exam

The final battle of the tournament begins with Boruto, Sarada and Shinki participating in a battle royale. As the lone representative remaining from the Hidden Sand, Shinki is determined to preserve the pride of the Sand, and goes on the offensive against Boruto and Sarada. Boruto and Sarada team up to fight Shinki, but he puts up an impenetrable defense. Sarada falls, and Boruto's chakra is nearly exhausted, but he refuses to give up!

Sasuke and the Kage wage an intense battle against the ridiculously powerful Momoshiki and Kinshiki of the Otsutsuki Clan. During that time, Boruto and Naruto, who have always been at odds, face each other and connect for the first time. But Momoshiki interrupts their reunion.

Popular actors Tomaru and Ashina receive death threats from an unknown person, so Team 10 is assigned to a joint mission with Team 7 to guard them. The two teams assemble to get the details of their mission, but Boruto sees a beautiful girl he doesn't remember seeing before…

Boruto and Sarada sneak out of the village and head to Orochimaru's research lab to find clues about Mitsuki. After evading the ninja guarding the entrance, they get in. But what they observe at the facility and hear from Orochimaru makes Boruto realize that he never truly knew Mitsuki. Meanwhile, the village finds out that Boruto and Sarada have gone in search of Mitsuki, and Shikadai and his Team 10 are assigned a tracking mission to bring back them back.

Kokuyou confronts Boruto and the others. Kokuyou, whose only goal is to become strong, is so powerful that he's taken down the Leaf ninja pursuing Mitsuki. He easily drives Boruto and his team into a corner. Just then, backup appears. Boruto and his friends manage to overcome Kokuyou, and finally catch with up Mitsuki.

Boruto is injured, unconscious and unable to continue. Everyone thinks about returning to the Hidden Leaf. However, being close to the Land of Earth, a surprise attack is highly possible. As a precaution, Inojin and Cho-Cho set out on recon of the surrounding area.

Boruto comes across an eating contest, held by the popular eateries in the Leaf for Parent and Child Day. Many families participate but they don’t know that this event has an outrageous hidden motive arranged by the organizers…

Namida from Team 15 uses an earsplitting cry that can temporarily paralyze or knock out an opponent, but she’s unable to fully control this special jutsu. When she panics, the jutsu can affect everyone nearby, even her allies. Worried that she’ll become a hindrance to missions, Namida decides to stop crying to prevent the jutsu from accidentally activating.

Boruto and Sarada confirm Juugo’s appearance. However, Juugo is under the influence of a ‘Cursed Seal’, and has transformed into a ferocious monster. The ‘Cursed Seal’ is one of Orochimaru’s research materials. Even though it amplifies strength and stimulates that attack instincts of living beings, Juugo is someone who possessed that capability from birth. Juugo has lost control over himself and begins to attack, putting up a difficult fight against Boruto and his comrades. Even though he’ll be getting assistance from his friends, will they cause damage to Juugo somehow?!

Boruto and his comrades are trying to interfere with the plans to use the cursed seal’s power. Even though Boruto and Suigetsu are headed over to Jugo's location, they get ensnared by a trap and get put in a tough position! On the other hand, Sarada and Karin employ diversionary tactics to battle their enemy. In addition, Wasabi and Namida have gotten separated from Boruto and his comrades. They get rescued by Sumire, but an enemy that she had fought against just a few days ago has reappeared in front of her! In order to protect the two of them, Sumire battles alongside Nue.

Konohamaru’s cousin, Mirai Sarutobi, is assigned to escort the Sixth Hokage Kakashi and his friend Might Guy to the hot springs.

A few days into the mission, Mirai visits the hot spring with Tenten, Guy’s former student. But that moment of relaxation is interrupted by Guy yelling about a ghost.

With Shikadai as captain, Boruto, Iwabe, and Wasabi form a special team for a mission to find and bring back a rare flower that only blooms for a short period of time. What should have been a simple mission ends up progressing slower than expected as the team continues to argue.

One day, Boruto and Konohamaru rescue Remon Yoimura from an attack. Remon says she has come to Hidden Leaf Village for sightseeing. Boruto and Konohamaru offer to show her around the Leaf and provide some protection as well.

Konohamaru and Boruto set out again to rescue Remon but find they’ve arrived a little late. Soma has broken the seal and begins his resurrection. Boruto and Konohamaru try desperately to stop this, but none of their weapons and ninjutsu work against him. Watching them, Remon is inspired to carry out her vow and employ the method her ancestor used long ago to seal the monster.

Boruto and Shinki continue on toward the Hidden Leaf Village to fulfill the mission entrusted to them. But Urashiki suddenly appears. Working together, Boruto and Shinki manage to slip away from Urashiki, but escaping him completely proves to be difficult.

Another intense battle begins for Boruto, Sasuke and Jiraiya as they try to defend Naruto from Urashiki. Sasuke protects Naruto, allowing Boruto and Jiraiya to barely escape with him.

Sumire's wish comes true and she joins the Scientific Ninja Tools Team, leaving only Wasabi and Namida on Team 15. A new member, Tsubaki Kurogane, a young girl who hails from the Land of Iron, joins them.

Inojin approaches his parents about mastering the Mind Transfer Jutsu. Cho-Cho agrees to assist and everything is set for training to begin. With his father Sai observing, Inojin starts training with Ino. But due to his lack of confidence, Inojin's unable to execute the jutsu, which ends up irritating his mother.

It is discovered that a wooden tag used to prevent unauthorized entry into the medical unit has been stolen, and the prison guards begin a search for the culprit. Until the offender is found, all prisoners are locked in their cells. Once the culprit is found, each of their cellmates will be forced into solitary confinement. If this happens and the team becomes separated from Kokuri, their mission could be jeopardized.

The clock ticks down to the rendezvous time for the escape, but there's no word from Sarada. If they miss this chance, everything will be ruined. Boruto puts his faith in Sarada and proceeds as planned with Mitsuki and Kokuri. Meanwhile, Sarada's lost consciousness from falling to the underground level of Hozuki Castle.

After completing his mission to guard Tento, Boruto is assigned a new B-rank mission with Sarada and Mitsuki. Boruto is excited to start but he finds the rare X Card that he had wanted in his pocket. Realizing that this was from Tento, he goes to their hotel and learns that Tento's life is in danger.

Tsubaki, Sumire’s replacement on Team 15, is proud of her samurai upbringing and is highly skilled, but her team’s overall mission performance is lackluster. Tsubaki devises a plan to hone her team’s skills, where they fight for who performs best on missions.

Using intel obtained from Shojoji the leader of the Mujina Gang, Sai and Sasuke journey to the Hidden Rain Village to find a location thought to be the hideout of an organization known as "Kara, the Husk.

Leaving Mitsuki in the care of Yubina, a doctor and friend of Mugino, Boruto and the others go to a black market in the Land of Silence, a dangerous and lawless gathering place for disgraced ninja. Team 7 make it to a shop located in the most dangerous district whose owner knows all the latest news. After a scuffle with the bodyguards, the team finally gets ready to ask the shopkeeper for information.

Boruto and the team finally catch up to the real thieves, two ninja brothers from the Land of Kasumi. Yuga uses a Forbidden Jutsu to summon a monster, and seals it and the team inside a strong barrier. Naruto insists on defeating it and getting out of the barrier. But Mugino argues that unnecessary fighting should be avoided since they don't know how to counter this special jutsu.

Boruto and Sarada convalesce at the Leaf Hospital while Mitsuki returns to Orochimaru's for treatment. For Boruto and Sarada, their inability to fight back against Deepa turns from frustration to resolve. Meanwhile, Konohamaru gives the Hokage his report regarding the incident, and in order to investigate the connection with the Kara more thoroughly, he asks that he be allowed to conduct surveillance on Victor's company.

Boruto, Sarada and Mitsuki are assigned to carry out Team 7’s missions by themselves until Konohamaru returns from an unexpected assignment. Boruto runs into Mugino in town and ends up going to his home at Mugino’s invitation.

Kawaki watches a Shinobi Hand-to-Hand Combat match between Naruto and Boruto. Boruto uses his specialty, the Shadow Clone Jutsu, to take on his father, but he struggles. Upon seeing this, Kawaki tells Boruto to use the power of his Karma. Meanwhile, Kawaki becomes interested in the Shadow Clone Jutsu that Naruto and Boruto like to use.

Using the Transportation Technique, Sasuke arrives at a strange location that is covered with mysterious inscriptions. There he finds many surprising things about the Otsutsuki Clan. Meanwhile, Boro, one of the leaders of the Kara, has been using his mysterious powers publicly to heal the sick. He tells the people who have gathered that he has a way for everyone to achieve happiness.

Boruto, Sarada, Mitsuki, and Kawaki arrive at the dimension that Naruto is trapped in, but Boro is there waiting for them. The four create a team with Sarada leading them to fight Boro, who uses a black mist to paralyze his enemies.

The reformed Team 7 launches a series of attacks on Boro. But even when they land successful attacks, Boro instantly revives himself with his extraordinary regeneration powers.

Konohamaru and Sai are given a mission to infiltrate Boro's cult in order to obtain information on Kara and its whereabouts.