Gordon works in a monster-ridden Gotham as a bounty hunter and seeks to find answers about the Indian Hill escapees, and why their powers appear to be killing them. Meanwhile, Bruce’s doppelganger roams the streets, and Barbara and Tabitha open a new nightclub called The Sirens.

Fish Mooney takes matters into her own hands to locate Hugo Strange, forcing Gordon to reluctantly team up with journalist Valerie Vale to find her. Penguin rises in popularity after criticizing the work of the GCPD and Bruce's investigation of the Court of Owls is compromised. Meanwhile, Ivy Pepper is reintroduced into Gotham city.

Penguin gains power as he narrows in on the nomination for Mayor of Gotham. Meanwhile, Gordon turns Alice into the GCPD for the bounty. Also, Bruce and Alfred race to find Bruce’s doppelganger after learning he’s assumed Bruce’s identity.

After coming in contact with a substance by the hand of Mad Hatter, Jim Gordon gets led on a psychedelic trip and must confront his past, present and future. Meanwhile, Penguin struggles with Nygma’s new relationship.

On the eve of their rehearsal dinner, a threat to Mario and Lee is exposed, and Falcone looks to Jim for help. Meanwhile, Nygma seeks revenge and Bruce learns more about The Court of Owls.

With Jerome on the loose with one target in mind, Bruce and Alfred's safety is compromised. Meanwhile, Gordon's uncle Frank pays him a visit, and Nygma and Penguin are forced to confront their issues face-to-face, with possible deadly consequences.

Nygma convinces himself that he doesn't need Penguin to succeed and begins to introduce himself to Gotham as "The Riddler." Bullock and Lucius Fox get caught up in Nygma's mind games, while Gordon learns troubling news about his father's death. Meanwhile, the Court of the Owls reveals its next move.

The Court of Owls devises a new plan regarding the future of Gotham, as Gordon uncovers information about his father and uncle's past, connecting him back to the organization. Meanwhile, Bruce wakes up in the temple and learns of the Shaman's wish for him.

Some of Gotham's most unhinged villains band together, while The Riddler continues his conquest of the city. Gordon is on a search for answers and all roads keep leading him back to the Court of Owls. Meanwhile, as Alfred begins to notice a change in Bruce, Bruce 2 confides in Selina.

Gordon tracks down the weapon the Court of Owls intend to use for the destruction of Gotham; Kathryn and Temple Shaman tell Bruce about their next move; Ivy offers Selina help.

Temple Shaman takes Bruce to the next phase of his training; Gordon and Bullock discover a crystal owl that carries the biggest secrets of Gotham's underworld; Nygma and Penguin must work together to get out of a tricky situation.