Two teenage girls have gone missing and the team know the clock is ticking to find them. Halstead, Antonio and Lindsay investigate a tenement which gives them a much needed lead. Voight brings the father of one of the girls to district in order to get some honest answers. Platt puts Roman and Burgess on gun buy-back duty where they ask questions when they aren’t supposed to.

While trying to help out, Olive Voight is attacked and taken. Ruzek and Atwater prove they belong on the team when they demonstrate smarts and savvy tracking down a lead that will hopefully bring them to Voight. Burgess and Roman try to track down a girl who runs off with a police badge.

The team is terrorized by a gun-wielding father who is desperate to find his missing daughter. Bunny stirs up accusations of misconduct from Voight's past.

Voight seeks revenge on the man who tried to kill him. A rumor causes a rift in Intelligence.

Responding to a call about a suspicious duffel bag at the Chicago Lakefront, Voight is horrified to discover that the bag contains the frigid and unmoving body of a newborn baby. Meanwhile, Voight is surprised to hear that his son is in town and Burgess and Roman grow closer.

In the Season 3 finale, the team investigates the murder of a single mom who was in contact with Voight's now-reformed son, who was himself brutally assaulted. Meanwhile, Roman makes a major decision and Crowley plans to make changes within the unit.

The team investigates a murder in which the victim appears to have been wearing a CPD-issued wire. Burgess works a case with a new partner. Crowley questions Lindsay about the night that Intelligence pursued Justin's killer.