After the body of young woman is found with multiple gunshot wounds, Intelligence uncovers details of her case that are similar to other deaths. They work to link all of these murders together to pin down the serial killer, and appease the families of the victims who have been looking for answers.

When a mutilated sex offender is found dead, it is unclear if he was the victim of a hate crime, sexual assault or self-mutilation. As Intelligence questions those related to the case, they find themselves up against a private "special police" force who may be covering up illegal activities.

After a female jogger is brutally murdered in the park, Rixton and Atwater arrive to see two suspects fleeing the scene. When the men make their way inside a church, the priest and parishioners gather outside to block law enforcement from entering. While investigating the case, Rixton gets caught in a lie with Voight.

The body of a 15-year-old girl is found crushed in an abandoned building after she runs away from a treatment center for troubled girls. Voight sends Halstead undercover as a guard to work from the inside at the center, where he believes the girls are trading sexual favors for something in return.

When a charred body is found in a torched house, Intelligence must work to identify the victim, as well as a young boy who is found badly injured inside. As they look to determine the cause and who may have been involved, they are faced with a web of secrets and lies. Meanwhile, Lindsay and Halstead receive an odd warning about Rixton that leaves them suspicious.

When Lindsay is tipped off about a grieving father looking to avenge his daughter's death, Olinsky goes undercover as a hitman-for-hire. With Gang Intelligence lacking enough evidence to arrest the original gangbanger in question, the team works to reinvestigate the case. Meanwhile, Ruzek comes back after finishing his undercover assignment only to have Voight knock him down to patrol duty.