Stardate: Unknown. The destruction of a Cardassian ship leads Sisko, Dukat, and Sisko's old friend Cal Hudson to the fact that there is an unofficial war between the Maquis and the Cardassians.

Stardate: Unknown. Sisko tries to resolve the Maquis crisis by preventing a war, freeing Gul Dukat and offering the defected Hudson the chance to return.

Stardate: Unknown. Odo tries to change the nature of a Jem'Hadar boy that Quark finds, while Sisko tries to break his son's relationship with a 20 year old Dabo girl.

Stardate: 48467.3. Thomas Riker, impersonating Will Riker, steals the Defiant in order to fight with the Maquis. Sisko assist Gul Dukat on Cardassia Prime in stopping the ship entering Cardassian territory.

Stardate: Unknown. Kira and Gul Dukat go after the lost prison ship Ravinok. Dukat has a secret. Meanwhile Kasidy Yates tries to find work near Bajor, leaving Sisko uncomfortable.

Stardate: Unknown. First Minister Shakaar visits the station, despite a threat of assassination. He falls in love with Kira much to Odo's dismay.

Stardate: 49665.3. When Worf destroys a civilian shuttle during an engagement with the Klingons, an extradition hearing is held to see if he must face charges.

Stardate: 49904.2. A renegade group of Jem'Hadar plunders Deep Space Nine. Sisko agrees to a combat operation with loyal Jem'Hadar to prevent the renegades completing a planetary gateway.

Stardate: Unknown. Quark must wrestle with his conscience when he becomes involved with arms merchants.

Stardate: Unknown. Dax and Worf accompany Martok on his first command since being held by the Dominion. But the ship they are given hasn't seen victory in months and the crew is near mutinous.

Stardate: Unknown. Serving with his recruit son aboard a Klingon vessel, Worf finds his relationship with his son strained. Meanwhile, strained relationships abound on DS9 between Major Kira and Gul Dukat.

Stardate: Unknown. Major Kira takes a romantic interest in a Bajoran radical from the other universe who transports himself into her universe and onto DS9.

Stardate: 51408.6. After being attacked by Cardassian forces, Sisko gets stranded with a very psychotic Gul Dukat, who was being transported to his trial. Meanwhile the crew of the Defiant races to rescue survivors.

Stardate: Unknown. Captain Sisko has a full sensory vision of himself as an under-appreciated science fiction magazine writer in 1950s America.

Stardate: 51825.4. Jake and Nog's runabout comes under attack from the Jem'Hadar. They are rescued by the Valiant, a ship manned by Red Squad, a elite group of young Starfleet cadets.

Stardate: 52152.6. Ezri joins Sisko and his family on his quest for the Orb of the Emissary. Colonel Kira mounts a blockade around a Bajoran moon where the Romulan alliance has deposited an ammunitions dump, claiming it in the name of defense for a Romulan hospital. And Quark joins the rest of the DS9 crew as they join Worf aboard a Klingon warship as they mount a dangerous mission in Jadzia Dax's name in an effort to get her spirit into Stovokohr, the Klingon equivalent of Heaven.

Stardate: Unknown. An aged Kor requests an opportunity to die with honor as a warrior.

Stardate: Unknown. Capt. Sisko and his away team volunteer to stay with a besieged unit at an isolate outpost.

Stardate: Unknown. Kira is kidnapped and taken to Empok Nor by a member of a Pah'Wraith cult and discovers the group leader is Gul Dukat.

Stardate: Unknown. To help find the apparently untraceable murderer of a young ensign, who had recently received a battlefield decoration, Ezri Dax reluctantly calls up the residual consciousness remnant of her symbiont’s past, the psychopathic murderer host, Joran.

Stardate: Unknown. Sisko leads, what he hopes will be, a final all-out assault on Cardassia Prime. Kira and Garak mount a suicidal assault on the Cardassian headquarters occupied by the Dominion, who in turn kill innocent women and children village by village in retaliation for the Resistance's attacks.