Clark tells Jor-El he’s ready to start his training, but Jor-El sends him back to Metropolis to cut ties with Lois before he can begin. Chloe is shocked when Lois suddenly reappears after having been missing for weeks, but Lois has no recollection of vanishing into thin air with the Legion ring. Chloe begs Clark to use the Legion ring to go back in time to save Jimmy, but he refuses, driving a wedge into their friendship. Meanwhile, Zod arrives at the Luthor mansion...

Jor-El mysteriously arrives at the Kent farm searching for his son, Kal-El, but meets Chloe instead. Convinced the Blur is Jor-El, Zod enlists Tess’s help in finding him to force him to reveal the secret to his powers. Clark realizes Jor-El is alive and on Earth and races to find him before Zod does.

Tess kidnaps Lois to find out where Lois went after she disappeared for weeks. Lois's memory of the future depicts a Metropolis under Zod's rule and Clark powerless under the red sun, while Chloe forms a resistance group with Oliver. After learning of these future events, Clark makes an important decision about Zod.

Oliver's past comes back to haunt him in the form of The Dark Archer, Oliver's former teacher, who seeks revenge on his student by taking aim at Lois and Chloe. Oliver faces down The Dark Archer after his former mentor kidnaps Mia AKA "Speedy" but is pushed to his limit and Clark races to stop him from making another deadly mistake.

It is Valentine’s Day and while Clark is out on a date with Lois, he unknowingly becomes infected by gemstone kryptonite, which has magical wish-fulfilling properties. Clark mentions to Lois that he wishes they had a more traditional relationship,so Lois quits the Daily Planet, moves in with Clark and starts planning their wedding. Still unaware of his new power, Clark also casually tells Chloe he wishes she would spend more time watching out for him, so an infected Chloe takes his wish to heart and sets her sights on a new target – Lois.

Bernard Chisholm, a doctor who died and was brought back to life by the Kandorians so they can experiment on him, escapes and kidnaps some Kandorians in order to prove aliens have invaded Earth. Bernard tries to get Lois to write a story validating his claim, but when Lois refuses, he kidnaps her too. In an effort to save his people, Zod poses as a reporter from the Daily Planet and uncovers Bernard’s secret lab. Clark arrives at the lab just in time to see Zod get shot.

Tess breaks into Watchtower, triggering an elaborate security system that Chloe installed, ultimately trapping the two women inside. Clark realizes Zod has given his soldiers super powers.