A CIA mission sends Harm & Beth O'Neil to Libya to pull an agent out of that country. But when the agent wants Harm to transport the entire family, Harm has to modify his mission while avoiding contact with the Libyan authorities. When that fails and their plane comes under attack, Harm & Beth must land on the only available landing strip...the U.S.S. Seahawk.

At JAG, a Marine is accused of being involved with the Al-Queda terrorist organization and Mac is assigned to defend him against the charge.

The death of a sailor repairing the ships radar dish leads Mac to prosecute and Harm to defend the sailor charged with the death.

At the Naval Academy, Mikey's friendship is tested when his roommate introduces him to his sister and the two of them hit it off, causing fireworks between Mikey, his roommate & his sister Cassie.

Cmdr. Turner defends himself against the complaint filed against him for displaying anti-Korean attitudes when assigned to deal with the SARS outbreak earlier.

Harm & Mac go up against one another in the case of a Marine General making public speeches stating Islam goes hand-in-hand with evil & terrorism.

When a Marine is killed in Iraq as the result of ""friendly fire"", Harm & Mac investigation results in possible involvment by a private military contractor.