It’s been two years since the end of the Fourth Great Ninja War. Shikamaru now has an important role within the Hidden Leaf government, and as a representative of the Leaf in the Alliance. One day, a situation develops with shinobi disappearing in droves, and Shikamaru takes on a dangerous mission.

After the Great War, many missing and Rogue Ninja made their way into the Land of Silence. Sai, who has infiltrated the region to investigate, sends a cryptic message back to the Leaf. Shikamaru, determined to find out what's happening, heads for the Land of Silence with two members of the ANBU, Soku and Ro. However, they must first get past a heavily guarded checkpoint.