Dylan sets out to find an assassin known as The Leper who is trying to kill his good friend.

After rescuing some people from a storm, a 'maggot' is brought onto Andromeda. This maggot chews through the systems and activations an old hologram of a crew member. This member had sealed himself in one of the hidden decks before the event horizon and had some through it. Believing that Dylan has betrayed the Commonwealth, an avatar and android of the crew man takes over the ship to bring Dylan to justice...

Tyr receives a communication from a human on an abandoned planet and leaves to meet her. As he does, a mad scientist boards the Andromeda using dark matter ninjas. After beating them, the man introduces himself. He loves the woman Tyr is with and wants to kill her, if he cant have her, nobody can. After saving her, he forgives her and lets her live.

The episode ends with Tyr revealing that she is actually a Neitzian, the last female from Codiac, Tyrs pride. He says that he wants them to start a new Codiac pride but she refuses and Tyr leaves.

Gaheris Rhade sets out to reshape the universe according to his will and restore order amid the chaos

The Andromeda tries to stop mysterious attacks occurring on nearby planets and outposts.

"Okay, that did not work," Trance says. "Let's try again."

Trance tries to figure out how to help the crew survive a deadly intruder.

When Dylan is invited to the launch of the first Commonwealth ship made in 307 years, you can tell something will go wrong. As the ship explodes sabotage is suspected. As Dylan and the crew try to find the culprit, they encounter many different suspects while being attacked a violent pride. Can Dylan find the culprit before the Maru is next?

When an old flame of Beka's is arrested on a planet where only the truth is told, its up to the Andromeda and her crew to save the day. After repeatedly lying, Beka gets no-where so she breaks the suspect out in flees to the Andromeda. As the story unravels, it seems that all is not as it seems.....

As the Andromeda responds to a distress call from a planet on the brink of destruction, the crew intercept a transmission from a ship returning to the surface. After seeing the message from Rev Bem the crew loads up to save him from the planet. As Rev is following the path of the Divine flashbacks occur of the Andromeda crew to help him on his way.

The Andromeda end up in the Prolon System where they discover a hibernation capsule occupied by a woman impersonating a dead princess.