Jean, a 14-year-old orphan, sailing into Paris to help his uncle design an airplane for the Paris Exposition's flight competition meets a pretty young girl named Nadia and her pet lion cub, King. He ends up rescuing her from a woman named Grandis who is trying to get Nadia's jewel, the Blue Water. Nadia leaves the only home she ever knew - a circus - as Jean has offered to help her search for her place of origin, starting with the random choice of Africa...

Jean, Nadia, and King are rescued by an American battleship in pursuit of sea monsters, who have apparently been responsible for sinking ships. That night, the battleship is attacked, and Jean, Nadia, and King are thrown overboard....

In a surprising turn of events, Grandis and her boys join forces with Jean to save Nadia, Marie, and King from Gargoyle. Their escape attempt nearly backfires, until the Nautilus shows up to save them....

When the Nautilus docks on an island to reestablish supplies, Nadia bonds with Grandis when the latter tells her how the first man she fell in love with turned out to be a treacherous cad.

After relocating Jean, Nadia, Marie, and King to his personal quarters (which he will later jettison from the doomed Nautilus), Nemo finds Electra holding a gun on him. In an extended flashback sequence, Electra reveals her tormented past, her complicated feelings for the captain... and a horrifying connection between Nadia and Nemo.

The New Nautilus and Gargoyle, now aboard Red Noah, face off in a spectacular duel of pyrotechnics, lasers, and, ultimately, wills. Midway through, both crafts head into outer space. After finally breaking in, Nemo, Jean, and Electra confront Gargoyle, who now has Nadia under his control.

All the pieces fall into place for the final stage of Jean and Nadia's journey around the world, Nemo and Gargoyle's long-standing feud, and the secret behind Nadia's Blue Water pendant.

I won't tell you how it ends....