Max is lured further into Logan's realm when he promises her more information about her past. He tells her about the woman who picked her up roadside as a child - a woman named Hannah. Max heads out to find Hannah, and ultimately gets more clues about her biological mother. But Hannah is forced to reveal Max's whereabouts to Lydecker. Max manages yet another daring escape from Lydecker. Also, Max's feline DNA puts her in heat and she relentlessly pursues a man, Eric. They never really hook up, but Eric is left with a huge crush on Max and gets unsuspectingly sucked into her adventure. Elsewhere, the private eye, Vogelsang, double-crosses Max and sells information about her to Lydecker.

Max's seizures increase. Low on her medication after her friends mistakenly flush it down the toilet, Max breaks into a drug clinic. She is caught and ends up in jail and more openly a target for Lydecker. When her friends find out, Cindy gets herself arrested in order to help Max break out. Meanwhile, Lydecker closes in on Max. With the help of a stranger Cindy and Max manage to breakout. Lydecker's efforts to trap Max are again thwarted by Logan's tactics.

Max comes to Sketchy's rescue after he loses a mobstar's money filled package. Meanwhile, Logan is approached by a young woman who wants him to locate her missing father but has a hidden agenda.

Max gets called to a secret meeting after seeing a personal ad containing her bar code tattoo number. She leans that Vogelsang claims to know about the remaining children from Manticore. He insists on a large sum of money for the information. Logan questions Vogelsang's motives and his relationship to Lydeker. Mysteriously, Logan's ex-wife reappears after many years of non-contact. Max is suspicious of the ex-wife's motives, but Logan feels drawn to his ex-wife. However, Max discovers the ex-wife has dark motives for returning. Elsewhere, Herbal is fired from the messenger service after using Rastafarian drugs. Cindy and Kendra head up a protest strike.

Max attends conference about genetic engineering. She sees Lydecker at the conference, but he doesn't recognize her. Before she can slip away unseen, the conference attendees are taken hostage by a group of anti-genetic engineering terrorists. Max can't use her abilities to escape for fear of being noticed. Logan negotiates to free the women and children in exchange for himself. Max is able to intervene to save Logan from an almost certain death. She takes out Lydecker in the process and stops the terrorists. Meanwhile at Jam Pony, the gang are riveted by the television coverage of the hostage situation and unaware that Max is involved. Herbal insists the terrorist situation is all part of God's plan.

Zack reappears and tells Max Lydecker has captured Brin, one of their Manticore sisters, and plans to do her harm. Max decides they must kidnap Lydecker and force him to reveal Brin's whereabouts. When Max and Zack discover that Lydecker was not behind Brin's disappearance, they have no choice but to team up with Lydecker to find their lost sister.

Lydecker gets the local police to post ""Wanted"" posters of Max throughout the city, charging her with Vogelsang's murder. Zack returns to beg Max to leave town. Logan offers Max and Zack shelter in a countryside retreat. While saying good-bye, their attraction to each other comes to the surface and Logan and Max kiss. Zack tries again to convince Max to run away with him. Just as she's ready to do it, she learns Logan is near death. Max heads back to Seattle to give Logan a blood transfusion. Though she puts her own life at risk, she does save Logan's life. Lydecker and the police close in on finding Max; however, the real murder confesses. It's Zack who turns himself in to police in order to spare Max. The helicopter transporting Zack back to Manticore mysteriously explodes. No one knows if Zack was killed. Meanwhile, Logan discovers the feeling has partially returned to his paralyzed leg. And, Sketchy is put in charge at Jam Pony. He seizes the opportunity to make himself look li

Tired of Logan's ""all business"" approach to their relationship, Max refuses to help with his latest case involving a medical supply smuggler. But when Logan gets double-crossed by his target, Max goes undercover as ""Eyes Only"" to rescue him from a certain death. Meanwhile, Normal is smitten with a woman with a secret.

Max takes on an army of superhuman soldiers in an episode amped up on action sequences. The trouble starts when Logan recruits his favorite biker chick to protect a Federal witness with vital info on local corruption. But the operation hits a snag after Max realizes that the guy she's guarding is a face from the not-so-distant---and very painful---past, and that those who want him dead may have plans for her as well.

The ""transgenic"" Reds catch up with Max when her lost pager reveals her whereabouts to them. The Reds are former death row convicts seeking to combine their technology with Max's genetic material. Logan and Max, after a deadly fight with a Red, learn that the transgenics' power is controlled by a special implant placed in their bodies. Meanwhile, the Reds take Original Cindy hostage and used to lure Max into their trap. Max risks it all and inserts the Red's implant into her own neck in hopes of gaining extra power. The implant makes her hyper violent and she kills off the Reds in order to free Original Cindy. Max then has a seizure. Logan learns the only way to save Max's life is to get the chip out of her head, but first he has to electrocute the chip in her neck. He is able to save her. Max then has to reveal to Original Cindy her Manticore secret. Also, Logan begins to regain the use of his legs and stands up.

Re-captured by Lydecker after his helicopter crash, Zack is tortured in an effort to get him to reveal the whereabouts of the other X5 escapees. After a failed escape attempt, Lydecker tortures Zack even more and Zack ""dies."" In a ingenious plan, Zack survives his burial and escapes from his coffin. He contacts Max. She meets him in a cave on the Manticore property. Unbeknownst to them, Max is wired and Lydecker and company hear all he is saying. He tells Max he's forgotten everything, but she coaches him to try and remember the whereabouts of the other X5 escapees. He does remember a few details which he tells Max. He reveals Tenga is working in a nearby bakery. This is enough information to get Lydecker on her tail. Max and Zack piece together that Lydecker knows the whereabouts of the X5 escapees. Logan sends a warning out to the X5ers through ""Eyes Only."" All are tipped off, but Tenga alerts Zack that she needs help escaping Lydecker. Zack and Max go to her and help her get awa

Max discovers Logan is dealing with a back-alley medical clinic doctor who has agreed to perform experimental therapies to keep him out of his wheelchair, who Max realizes is also a former Manticore scientist. Meanwhile,Original Cindy returns to Jam Pony and continues to learn more about Max and her relationship to Logan.

Logan is tipped off by a friend at the morgue to a murder victim with a bar code tattoo on his neck. He tells Max who then investigates. Max reads the bar code to be that of fellow X5 escapee, Ben. However, the murder victim is not Ben. While she is viewing the body, Lydecker shows up to confiscate the body and close the investigation. Max hides. After another body with the same bar code shows up, Max investigates the crime scene. While at the scene, Max has several flashbacks that make it clear to her that the real Ben is re-enacting a traumatic Manticore training exercise where a prisoner was hunted down and savagely murdered. Max herself participated in the exercise. Max remembers Ben had an obsession with a religious icon after a Manticore janitor gave him a card with her image. It looks to be an image of the Virgin Mary, but the young Manticore soldiers call her the blue lady. Max goes to a local church and a priest befriends her. Later, the priest is abducted by Ben, who tatt

Investigating a string of murders of recently paroled convicts, Max and Logan meet a ""Fisher King""-like super hero who at first appears harmless and slightly crazy, but ultimately has a profound effect on both their personal lives. Discovering this post-pulse crusade as he follows her around Seattle, Max's original opinion of the ""super hero"" changes after she sees him actually perform super-human feats. Bringing Logan into the mix, they discover the ""super hero"" is a former NASA janitor who managed to abscond post-pulse with a highly advanced exoskeleton that attached to one's nervous system and provides super-human abilities. Though fascinated by the device, Logan's interest is piqued when the man's ramblings about conspiracy theories and ""death from the sky"" bear a striking resemblance to Logan's murder investigation. Digging further Logan discovers a secret police plot to equip special hover-drones with weapons that can track and kill any target, especially ex-cons.