In the season finale, Dawson and Joey confront their true feelings. Joey, visits her father in prison, and debates leaving to go to France.

Dawson's confidence as a filmmaker is shaken when his new teacher turns out to be a movie studio executive on sabbatical in Capeside and tells Dawson the painful truth about his amateur movie. The future is unsure for Joey as well, when a fortuneteller advises her to be open to every new opportunity that crosses her path, and she stumbles into Colin, a gorgeous photographer who brings out Joey's free-spirited side during a wild photo shoot.

With Joey's father back in town, Bessie and him decide to expand the Ice House to also cater weddings. Needing help they enlist Andie, who says she hate's weddings but doesn't and Pacey who loves them. Joey who doesn't think her father recently out of jail should be seen in Capeside and Dawson, who is angry when his parents arrive separately. Jack and Dawson battle to help a scared bride, while Andie and Pacey scramble to fix the cake. Making Gail sad, Mitch shows up to the wedding with Mrs. Kennedy. Jen and Abby's sneaking into the wedding leads to tragedy.

Abby is dead, and all of Capeside is attempting to "whitewash" her life. But all the hypocrisy is making Jen crazy, in a spiritual discussion she denounces God and gets Grams angered. When eulogizing Abby she further embarrasses Grams by announcing that Abby taught her the falseness of God. Abby's mom also asks Andie to eulogize her thinking they were friends and memories of Andie's brother are brought up. Andie's actions scare Pacey. Joey is scared to go to the funeral, being that she hasn't been to one since her mother, at the graveyard she and Dawson decide to go visit her mother for the first time.

All of the gang's lives go through changes. After Andie begins seeing her dead brother Tim in the last episode, Jack and Pacey agree to call Mr. McPhee not realizing that he'll want them to be treated in Providence, not Capeside. All are stunned at the new changes and Andie and Pacey must decide if Andie's mental wellness is more important than being together. Jack also must decide whether or not to go with Andie or stay. Dawson while helping Mr. Potter extend the Ice House interviews him for a film project about his changed life, but has it changed? Jen decides to make a change so she calls her mother and inquires about returning home or visiting and is told it is inconvenient right now.

As the WB commercial says... "Children must pay for the sins of their fathers."

Dawson sees Mr. Potter dealing drugs and he is unsure whether or not to tell Joey or leave things looking good. Mr. Witter has to stake out the Ice House because the Capeside police department believes that Mr. Potter is back to his usual tricks. When the gang is studying in the Ice House, one of Mr. Potter's customers lights it on fire, making Mr. Witter more suspicious and Dawson's conflict greater. Gail tells Mitch about her new job offer in Chicago and her discussion to go for it. Pacey becomes depressed and his achievement level decreases, now that Andie is gone, which his father teases him for. Finally Mr. Witter does realize her importance and that he has been a bad father. Jack becomes worried that Jen is suicidal when she doesn't immediately leave the burning Ice House. But later, Grams and Jen reconcile, causing Jen to move back in taking Jack also.