Stardate: 48546.2. In the search for omicron particles to boost the ship's energy supplies, Voyager inadvertently injures a space-faring life form.

Stardate: 48623.5. While investigating an asteroid belt containing a new element, Harry Kim is pulled into a 'subspace vacuole' and switched with a dead body. Soon after the body is revived the crew learn that the asteroid belt is the graveyard of an alien culture that transports its dead in the belief that they evolve into a higher state of consciousness. Harry's appearance on the homeworld begins to raise questions about the existence of their afterlife.

Stardate: 48846.5. In order to bring some rebellious Maquis crewmembers into line, Tuvok gives them a Starfleet Academy crash course.

Stardate: 49005.3. A young Kazon trying to earn his name and place among his people kidnaps Chakotay.

Stardate: 49011. Harry Kim arises one morning to find he is back in San Francisco on Earth with his girlfriend Libby. In order to help him restore reality, he enlists the help of a shady figure in France by the name of Tom Paris, who has no idea who Harry is.

Stardate: Unknown. After the Kazon steal some Federation technology Chakotay goes after them on his own and is captured.

Stardate: 49548.7. An accident in a plasma cloud duplicates Voyager after they are attacked by the Vidiians. During the aftermath, the ship is severely damaged, Ensign Wildman's baby dies and Harry Kim is sucked into space through a hull breach.

Stardate: 50126.4. After falling ill to what appears to be a repressed memory Tuvok must perform a mind-meld with Captain Janeway in order to survive. The meld takes them back to when Tuvok was a junior science officer aboard the U.S.S. Excelsior under the command of Captain Hikaru Sulu.

Stardate: Unknown. Both Voyager and a 29th century Federation Timeship, the Aeon are pulled back in time to Earth in the late 20th century. The Timeship Aeon crashes in Arizona during the 1960's, while Voyager appears in orbit around Earth during 1996.

Stardate: 50348.1. An injured alien named Tieran transfers his consciousness into Kes' mind moments before he dies. He then gains control over her and begins using her abilities to steal a shuttlecraft and return to his home world to attempt a political coup.

Stardate: Unknown. An alien palaeontologist discovers a common ancestral link between his people and humans. He believes that this proves that his people (the Voth) evolved on Earth and migrated to the Delta Quadrant millions of years ago, but his government is not as willing to believe his interpretation of the evidence.

Stardate: 50984.3. Voyager finally enters Borg space, only to discover a threat more powerful than the Borg themselves.

Stardate: 51244.3. When members of the crew begin suffering from bizarre mutations, Seven of Nine may be the only one who can uncover the reasons why.

Stardate: 51501.4. As letters from the Alpha Quadrant come trickling through the communications array, the Voyager crew learns of an assortment of joyous, disturbing, and inevitable news.

Stardate: Unknown. After having taken over Voyager, the Hirogen supply the crew members with artificial identities and subject them to violent holodeck simulations.

Stardate: 52081.2. Traveling through a large area of space completely devoid of stars and civilizations, the Voyager crew copes with the prospect of long-term isolation.

Stardate: Unknown. The crew discovers an outpost manned by a group of Species 8472, who have taken human form as a training measure for an invasion of the Alpha Quadrant.

Stardate: Unknown. A transmission emanating from surviving technology from a destroyed Borg vessel induces multiple personality disorder in Seven of Nine.

Stardate: Unknown. A moral dilemma arises when the Doctor is forced to consult the specialized medical database of a Cardassian war criminal in order to save Torres' life.

Stardate: Unknown. Unable to resist his strong feelings for an alien woman, Ensign Kim breaks Starfleet protocol and engages in a torrid affair that lands him in hot water with the captain.

Stardate: Unknown. Captain Janeway relates the story of her distant ancestor Shannon O'Donnell during the construction of the Millennium Gate on Earth during New Year's Eve 1999. She must convince the last holdout, local bookstore owner Henry Janeway to approve the plan.

Stardate: Unknown. Voyager encounters another Federation starship, the USS Equinox, in the Delta Quadrant. But as an alien presence prepares an attack, Janeway begins to uncover the Equinox's sinister secret.

Stardate: Unknown. As Janeway's determination to capture Captain Ransom becomes an obsession, Ransom begins having second thoughts about his methods.

Stardate: Unknown. Tom Paris persuades Chakotay to allow him to buy a shuttle from a junkyard. While repairing it, the shuttle, named 'Alice', begins to gain control over Tom's mind.

Stardate: Unknown. The inhabitants of the holo-city of Fair Haven suspect the Voyager crew of having mystical powers when they witness the use of their futuristic technology.

Stardate: Unknown. When Voyager encounters some engineering problems, Neelix keeps the Borg children entertained by telling the story of an adventure that the crew experienced several months ago, with the ghost that lives on deck twelve.

Stardate: 54129.4 - A key Borg component in Seven's brain begins shutting down, leading to the possibility that she may be facing the equivalent of a terminal illness.

Stardate: 54337.5 - Voyager secretly trails two Hirogen ships in pursuit of the renegade hologram ship. Iden, the band's self-appointed leader, begins showing signs of delusional behaviour when he considers himself as the 'saviour of his people', and believes that his people will worship him as a God in their new settlement. With Voyager and the Hirogen ships trailing close behind, the Doctor and Torres must find a way to disable the ships and the holograms before they come under attack from the Hirogen, and before Iden can execute his plan.

Stardate: 54732.3 - When the Doctor arranges to have his recently completed holodeck novel published in the Alpha Quadrant, certain aspects of the story hit too close to home among his shipmates.