Stardate: 48532.4. During an away mission in the search for dilithium crystals, Neelix is attacked and his lungs are surgically removed by a disease-ridden race of aliens known as the Vidiians. His only hope for survival is if the crew of Voyager can get them back.

Stardate: Unknown. Tom Paris is accused of a murder he claims he did not commit. His sentence is to re-live the last few moments of his victim's life every 14 hours through a memory transplant.

Stardate: 48658.2. When stolen Federation technology is found on a severely damaged Kazon Nistrim ship, Seska becomes the prime suspect. The evidence is further reinforced when questions arise regarding her true heritage.

Stardate: 48784.2. The Vidiians capture Paris, Torres and Durst while on an away mission. Torres is taken to a lab and 'split' into two people: one human, and one Klingon.

Stardate: 48975.1. After discovering a 1936 Ford truck from Earth floating in space Voyager discovers a series of cryo-statis chambers containing abductees from Earth during the 1930's, including Amelia Earhart and her navigator.

Stardate: 48892.1. When the Doctor is activated during a Red Alert, he learns that the ship has been abandoned, and that only B'Elanna Torres and an injured Captain Janeway are left on board. Soon afterwards, Lt. Barclay appears and tells him that his entire time on Voyager is an elaborate simulation, and he's really a holo-engineer by the name of Zimmerman on Jupiter station in the Alpha Quadrant, who has been trapped on a holodeck for six hours. If he does not destroy Voyager's warp core and end the program soon he will die.

Stardate: Unknown. When Neelix and Paris find themselves trapped on a planet dubbed 'Planet Hell', they become the unwilling parents of an infant alien that is near death. In the meantime, a ship appears and begins attacking Voyager.

Stardate: 49164.8. The crew of Voyager make contact with the Caretaker's mate, Suspiria. Kes meets with the descendants of other Ocampa on Suspiria's array that left the homeworld over 300 years ago. Soon, her mental abilities begin to grow to a point where she can no longer control them, and nearly kills Tuvok in the process.

Stardate: Unknown. After finding and repairing a robot found drifting in space, B'Elanna is abducted and forced to design a new prototype or Voyager will be destroyed.

Stardate: Unknown. After finding a type of dilithium that can survive at a higher temperatures, Tom Paris comes up with the ingenious idea of attempting to cross the transwarp threshold in an attempt to find a way to get home faster.

Stardate: 49485.2. After weeks of erratic behavior, Tom Paris leaves Voyager and joins a Talaxian convoy.

Stardate: Unknown. When Tuvok crashes on a moon, he discovers three small children who believe they are about to die.

Stardate: 49690.1. When Captain Janeway and Chakotay contract an incurable virus they are left on a planet that shield them from its effects. While Janeway searches for a cure, she begins to form a deeper relationship with her first officer. Onboard Voyager, Tuvok, who is now in command, faces a near mutiny.

Stardate: 50156.2. Paris and Kim are sent to an Akritian prison after being accused of a terrorist bombing.

Stardate: 50074.3. A pair of Ferengi is found masquerading as Gods to a culture still in its Bronze Age. It is discovered that they had arrived through the Barzan Wormhole, which leads back to the Alpha Quadrant, however, its Delta Quadrant end is highly unstable and always moving.

Stardate: Unknown. Both Voyager and a 29th century Federation Timeship, the Aeon are pulled back in time to Earth in the late 20th century. The Timeship Aeon crashes in Arizona during the 1960's, while Voyager appears in orbit around Earth during 1996.

Stardate: 50384.2. Voyager encounters several supernova in a small region of space. Time soon reveals that it is the after effects of a civil war within the Q-Continuum. Q appears and believes that the solution to the problem is for him to produce a child, and his mate of choice is Captain Kathryn Janeway. Matters are complicated when a jealous female Q appears claiming that Q was her boyfriend.

Stardate: Unknown. Voyager encounters a region of space named the Nekrit Expanse. Since Neelix has no knowledge about the space after this point, he tries to make himself feel useful to the crew by trying to obtain a map from an old friend named Wixiban, who uses him as a courier for illegal substances.

Stardate: 50614.2. During an away mission, Chakotay discovers a Federation hailing signature coming from an alien planet. After landing, he learns that all is not peaceful, and those helping him have not been entirely honest about their true origins.

Stardate: 50984.3. Voyager finally enters Borg space, only to discover a threat more powerful than the Borg themselves.

Stardate: 51082.4. Chakotay is stranded on a planet where two races are trying to wipe each other out in a massive, planet-wide war.

Stardate: Unknown. Seven of Nine steals a shuttlecraft and flees Voyager in an attempt to answer a mysterious homing beacon and return to the Borg Collective.

Stardate: 51425.4. While Chakotay and Paris remain on board Annorax's time ship, Janeway attempts to repair Voyager enough to pursue her crew members' abductors.

Stardate: 51449.2. Neelix is killed during an away mission, but is revived when Seven of Nine modifies Borg technology to revive him. Soon, he begins to question all that he has been taught about the afterlife.

Stardate: 51501.4. As letters from the Alpha Quadrant come trickling through the communications array, the Voyager crew learns of an assortment of joyous, disturbing, and inevitable news.

Stardate: 52081.2. Traveling through a large area of space completely devoid of stars and civilizations, the Voyager crew copes with the prospect of long-term isolation.

Stardate: Unknown. The crew discovers an outpost manned by a group of Species 8472, who have taken human form as a training measure for an invasion of the Alpha Quadrant.

Stardate: Unknown. In the future, Harry Kim attempts to correct a mistake he made 15 years earlier, which had resulted in the loss of Voyager during use of experimental engine technology.

Stardate: Unknown. When trying to transport illegal refugees through the territory of a xenophobic civilization, Janeway must put her trust in a defector who offers his help.

Stardate: Unknown. Trans-dimensional photonic lifeforms become entangled in a war with the characters from Tom Paris' "Captain Proton" program after mistaking Voyager's holodeck for reality.

Stardate: Unknown. Unable to resist his strong feelings for an alien woman, Ensign Kim breaks Starfleet protocol and engages in a torrid affair that lands him in hot water with the captain.

Stardate: Unknown. The entire ship and crew begin to disintegrate, leading to a discovery that they aren't what they seem.

Stardate: Unknown. Under the guidance of the Doctor, Seven of Nine learns some social aspects of human dating.

Stardate: Unknown. After Kim beams an alien missile onboard Voyager it links up to the Doctor's systems and requests that it is allowed to complete its mission of mass destruction.

Stardate: 53049.2. The arrival of three mysterious "individuals" among an influx of visitors to Voyager has mysterious consequences for Seven, who must relive a Borg experience from eight years earlier.

Stardate: Unknown. The ship is placed in danger when it comes under attack from a territorial race of aliens known as the Turei. While sheltering on a planet, Captain Janeway tries to make an alliance with its inhabitants, the Vaadwaur. However, she soon begins to think that the Vaadwaur may pose a bigger threat than the enemy above.

Stardate: Unknown. Voyager searches for a long-lost Mars spacecraft.

Stardate: Unknown. As the crew enjoys time off in a holo-program created by Tom Paris, and set in an Irish village named 'Fair Haven,' Captain Janeway falls for a handsome holo-character specifically designed for her. A deadly neutrino wave approaching Voyager shortly bring the festivities to a halt as this wave may prove to be more dangerous than they first imagined.

Stardate: Unknown. When the Doctor's singing talents are discovered by a technologically superior race, his new found popularity makes him consider resigning his commission to stay on the alien world with his millions of adoring fans.

Stardate: Unknown. The inhabitants of the holo-city of Fair Haven suspect the Voyager crew of having mystical powers when they witness the use of their futuristic technology.

Stardate: Unknown. Captain Janeway takes three crewmen with poor performance records on an away mission in the Delta Flyer in an attempt to bring them to Starfleet standards. However, an unexpected collision with a Dark Matter comet leaves the crew in a perilous situation.

Stardate: Unknown. News reaches Voyager through the up-and-running Pathfinder project that the Doctor's creator, Lewis Zimmerman, is critically ill. In an attempt to save his life, the Doctor's program is transmitted to the Alpha Quadrant, but once there, he finds Zimmerman does not want to be examined by an 'obsolete' EMH program.

Stardate: Unknown. Seven of Nine is contacted by Borg drones who have the ability to exist in a virtual realm that gives them freedom as individuals.

Stardate: 54058.6 - Torres and Paris' relationship takes a twist on the eve of a shuttle racing event Paris has entered, celebrating the anniversary of a peace treaty in a former war zone.

Stardate: 54283.3 - In a region of space where holograms are prohibited, the Doctor is forced to hide by transferring his program into Seven's mind, upon which he takes over control of her body.

Stardate: 54452.6 - When B'Elanna learns she is pregnant, she tries to proactively repress her child's Klingon heritage on the basis of her own troubled past.

Stardate: 54553.4 - Voyager is pulled into a barren spatial void where survival is based on preying upon others.

Stardate: Unknown - Seven of Nine runs a series of holodeck simulations to explore her untapped emotions.

Stardate: 54775.4 - The Voyager crew, on a mission to track down a historic Earth probe designed to contact intelligent life, finds the probe had indeed crossed paths with another civilization, but with catastrophic results.

Stardate: 54890.7 - The Doctor is forced to carry out a secret mission where he must impersonate members of the Voyager crew.