The team investigates a woman that re-appears after weeks of being missing with a rare disease. She also inexplicably causes pain and death to the people she meets. During the investigation, dangerous level of radiation are detected. Walter obsesses about cotton candy; Peter strikes a deal with Nina Sharp; and a truth about Olivia is discovered.

Olivia, Walter and Peter are called in to investigate the death of a car salesman who was found in a pool of "goo," exactly like another man across the country. When Walter discovers that the "goo" is brain matter, the trio tries to figure out how the killer can liquefy human brains. As the deaths pile up, the investigation reveals a common thread linking the victims together in an unthinkable manner. Meanwhile, Olivia is horrified when the case places a loved one in harm's way

Just seconds before a building is demolished, a mysterious mute child that has been living alone underground is discovered. When the FBI's Fringe Division investigates, the boy forms an unspoken connection with Agent Olivia Dunham. Meanwhile, an especially gruesome serial killer resurfaces and showcases his "artistry" by displaying his work publicly. As the boy gradually assimilates into a new environment, Olivia and the team must race against the clock to prevent the mad man from causing further massacre.