As the "Heroes" continue to test their newfound extraordinary abilities, Claire tries to maintain a normal social life when a romance with the football quarterback takes a tragic turn. While Hiro convinces his friend that they are destined to travel to America to save the world, a frightened Niki follows instructions from a mysterious, unknown source that directs her to the middle of the desert.

Meanwhile, Nathan uses Peter's accident to propel his political campaign. The elusive Sylar is being hunted by both Matt and the FBI, as well as Suresh, whose father's journal leads to potential clues.

Confused after losing track of another block of time, Niki finds the police on her doorstep, searching for her fugitive husband D.L. Hawkins. Claire confesses to her father. Hiro and his friend get jumped by some Vegas high-rollers. Peter receives a life-changing message from an unlikely source.

Meanwhile, Matt secretly uses his mind-reading ability to anticipate his wife's needs. Dismayed by recent events, Suresh makes plans to return to India to lay both his father's remains and his research to rest.

Facing a crisis involving her son Micah, a distraught Niki reveals her recent personal struggles to a friend. Pushing aside his own issues at home, Matt assists Audrey's investigation into another bizarre murder, but their pursuit of mysterious serial killer Sylar takes an unexpected turn. After failing to act like a "superhero" when faced with danger, Hiro questions his heroism. Nathan and his wife Heidi strategize how to win the congressional election. Claire is shocked to learn where her missing tape wound up.

Meanwhile, her father is disturbed by news from one of his associates.

Back in India to mourn the passing of his father, Suresh encounters mysterious dreams of the past that force him to question what path to take next. Continuing their journey to New York, Hiro and Ando stop at a diner and meet someone interesting. In crisis, Niki comes to a personal understanding. Determined to see one of Isaac's paintings that Simone recently sold, Peter asks Nathan for help in finding a key to the future. Intent on getting back to her normal life, Claire focuses on Homecoming preparations, unaware of what's to come.

Meanwhile, Mr. Bennett and a surprising associate focus their attentions on another "hero."

As the clock turns back six months for all of the "Heroes," Mohinder's father Chandra Suresh arrives in New York to begin his quest to find individuals with extraordinary abilities, and meets someone all to eager to be special. Peter celebrates his graduation from nursing school, and learns that Nathan plans to prosecute a case that could mean trouble for the entire Petrelli family. A surprise visit from her father brings out the worst in Niki. Hiro attempts to be a hero and change the future for someone important. Claire joins the cheerleading squad and makes a curious discovery. Mr. Bennet and the Haitian meet someone special.

Matt reveals his abilities to his wife. HRG confers with Mohinder. Now that she knows the truth, Claire tries to make sense of her life. Hiro seeks the sword that he is destined to own. Niki must face the consequences of her decision to turn herself in to the police. Simone and Nathan are worried about Peter, who has been in a coma for two weeks. Peter meets a new hero. Micah visits his mother.

Hiro continues to search for a sword while being chased by mysterious figures. An invisible man named Claude has something to teach one of the heroes. D.L. takes on new family responsibilities, and Matt opens up to his wife. H.R.G. continues to focus on the captive Sylar. Claire seeks out the Haitian and then her birth parents. Mohinder looks for those on the list, and receives a surprise visitor. A psychiatrist offers to help Niki.

Matt enters the private security business and receives an objectionable client. Suresh finds another person on the list. As her home-life worsens, Claire strives to learn more about her birth parents. Hiro and Ando get sidetracked in Vegas again while searching for the sword. Nathan is forced to deal with a secret from his past. Still indebted to Mr. Linderman, Jessica resorts to unsavory methods that could spell doom for a fellow hero.

Peter learns that he and Claude may have been betrayed. Matt's reunited with the radioactive Ted Sprague and Hana Gitelman a woman with "wireless" mental abilities. Hiro makes a tough choice about his mission. Claire can no longer hold back her anger towards HRG.

A woman named Elle is searching for Peter. Ando looks for Hiro in the past. Matt looks for the man in Molly's dreams. HRG takes another step in hopes of protecting his family and himself.

HRG convinces Emile Danko, a.k.a. "The Hunter", to release Tracy from Building 26, in hopes that she will lead them to "Rebel". As Angela evades capture, she turns to an old friend for help. In Los Angeles, Hiro and Ando continue on their latest mission from "Rebel" to protect the newest hero.

Sylar continues his unusual partnership and begins to have an unexpected identity crisis. Hiro and Ando take measures toward bringing down Building 26. Meanwhile, Matt’s new found fatherhood changes his priorities. Elsewhere, Nathan sets a plan in motion to right the wrongs of his government operation.

Claire, back home in California, begins attending college, but is having difficulty adjusting when a mysterious death of a student during the orientation puts her back in the spotlight. In Japan, Hiro and Ando continue their quest to help people with abilities and go so much as to advertise themselves. Meanwhile, Angela fears Nathan/Syler will discover his true identity. Matt tries to settle down back in Los Angeles and raise his son and not worry about unexpected visitors. Elsewhere, Peter is using his ability for good when a mysterious carnival clan, led by Samuel Sullivan, arrives in town which could spell trouble for him and everyone else.

Claire and her new friend Gretchen investigate the death of Claire's roommate Annie, while Noah comes to Peter for assistance. Samuel and Edgar recover the compass, Hiro realizes his new destiny, and Matt is tormented with mental images from a dangerous foe.

Matt goes to extreme measures to extinguish Sylar , who continues to torment him. Elsewhere, HRG calls in a favor from Tracy to save a troubled young boy whose misfortunes resemble her own. While Claire and Gretchen are being hazed by their new sorority sisters, they realize pledging might not be their biggest problem.

H.R.G. recruits Matt to help him take down Samuel, as they use his long-lost love, Vanessa, to lure him to them, but Samuel has his own plans for Vanessa in the works. Meanwhile, Hiro and Ando go to extreme lengths to save Dr. Suresh. Elsewhere, Peter's introduction of Emma to his mother brings forth visions of a very grim future.

Hiros life hangs in the balance as his brain tumor worsens, prompting him to subconsciously deal with some of his past decisions. Meanwhile, Sylar pays Claire an unexpected visit to get answers as to why he isn't quite himself. Elsewhere, Samuels plan to impress his long-lost love, Vanessa, takes a terrifying turn.

H.R.G. enacts his plan to take down the Carnival with the help of Lauren and Suresh. Sylar visits Matt looking to understand his desire to make a human connection, but Matt has a plan of his own. Meanwhile, Peter warns Emma of Samuel's intentions after his grim vision of the future.