Tension within the group begins to mount as the Strike Team attempt to rectify a mistake Vic made when he decided to use some of the cash from the stolen money train during a botched gun-running sting. Meanwhile, Dutch and Claudette seek the help of a college honor student named Esteban who was the only survivor in the murder of two latin gang members, one of them being his close friend.

When the ex-wife and child of Julien's former partner, Tommy, are murdered, Tommy becomes a suspect, prompting Julien to team up with Mackey to conduct their own investigation. Elsewhere, Shane goes undercover to catch a group attacking gay prostitutes, and Claudette and Dutch investigate a rape case against Aceveda's orders.

An oversight puts Waylon and Trish in serious danger during an undercover job and Claudette is to blame. Meanwhile, Tommy makes a drastic decision when he realizes nobody in the Barn can help him get back on the job.

When a mole in the treasury department is discovered and the framed suspect in the Armenian money train robbery turns up missing, the Strike team race to find the suspect before their cover is blown. Meanwhile, Claudette attempts to make amends with the Decoy Squad by going undercover to help them on a case.

A tip from Lemonhead's juvie would leads Vic and Monica to take down a major heroin operation with connections to Antwon Mitchell. Monica continues to battle Aceveda as she tries to sell her new policies to the community, and Julien begins to doubt her methods. Claudette loses trust in Dutch when she suspects he made a backroom deal with the D.A. And Shane and Army find themselves over their heads with Antwon when he blames them for Vic's heroin bust.

Monica orders her units to turn the streets of Farmington inside-out when two officers mysteriously disappear after answering a 911 call. Shane tries to make amends with his old crew after Vic agrees to help him get out from under Antwon, but things don't work out as planned. Dutch and Claudette convince Monica to let them take active roles in the case of the missing officers, but soon find themselves at a dead end with the only witness being clinically insane.

During an interrogation, Kavanaugh reviews the Strike Team’s corrupt past and attempts to weaken Lem’s loyalty to Vic by bringing up the connection to Terry’s murder. Meanwhile, the Strike Team investigates a multiple homicide. Dutch and Claudette suspect that a minister might have been involved in an attempted murder. Tina gets in over her head while on duty with Julien.

As the Strike Team is preoccupied with gang violence, Kavanaugh decides to make the Barn his base of operations. An evasive serial killer from Dutch and Claudette’s past reenters their life. Meanwhile, additional strain is placed on their working relationship when Tina learns something personal about Julien.

To the dismay of his friends, a weary Lem is thinking about accepting a deal from the D.A. where he has to plead guilty to the heroin charges. With no other choice, Vic reluctantly meets with Antwon in order to ensure Lem’s safety in prison. Meanwhile, unforeseen circumstances that are beyond Claudette and Dutch’s control might cause irrevocable damage to their friendship.

After being badly beaten, Shane's life spirals even more out of control as his guilt continues to eat away at him and his marriage begins to fall apart. Vic and Ronnie try to learn who was responsible for Shane's attack. Meanwhile, under the new leadership of Kevin Hiatt, Claudette assigns the Strike Team to investigate the San Marcos murders. Dutch and Billings make progress in a serial rapist case.

Vic learns about his true status at the Barn from Hiatt. Shane gets involved with the daughter of an Armenian mob boss. Claudette begins to question Hiatt's loyalty.

Claudette encounters a murderous old nemesis; Vic confronts Olivia about her political connections; Dutch's case gets personal.

A prostitute from Vic's past is the key to taking down a violent drug dealer; Dutch worries about Claudette's health; Danny takes drastic measures to protect her child.

Corrine agrees to be Vic and Shane's go-between and also agrees to cooperate with Claudette and Dutch as she does so. Meanwhile, Vic comes to an understanding with Aceveda and seeks one out with Olivia; and Claudette assigns Ronnie to work with Julian to investigate the murder of a high-school football star, keeping Ronnie out of the barn and unable to intercept the letter Shane sent to Claudette detailing the Strike Team's "sins."