The body of Anton Zoref is invaded by an unknown life force. The man soon manifests an uncontrollable ability to absorb energy. As the Alphans struggle to understand this mysterious force, Zoref's need becomes insatiable. Driven by instinct, he makes his way to the greatest source of energy on Alpha: the Nuclear Generating Plant.

The Moon is on a collision course with an enormous planet. On a scouting mission, Koenig encounters Arra, the Queen of Atheria. The aged monarch proclaims the collision is a preordained event and must occur for her people to evolve to a higher plane of existence. Now Koenig must convince his staff to have faith and do nothing in the face of apparent destruction.

Approaching an inhabited planet, the Alphans are suddenly pounced upon by warships. In an unprovoked attack, Moonbase Alpha is devastated by Earth-style Hawk fighters. With 128 dead and Alpha unable to sustain life, Koenig and Helena appeal to the aliens for mercy. The aliens proclaim the Earthmen to be an invading virus, with no right to exist.

On a frozen planet, the Alphans encounter shipwrecked humans from a lost expedition. The expatriates from Earth enjoy an idyllic existence: they have been made immortal and have lived there for over 880 years. They invite the Alphans to join them in paradise, but dissidents reveal all is not at it seems, teaching Koenig that immortality comes with a price.

The automated Earth space probe Voyager One is approaching the Moon. With the radioactive exhaust from its engine certain to extinguish all life on Moonbase, the Alphans try to gain control and shut down the drive. Help comes when the probe's designer is found living on Alpha under an assumed name. However, Voyager is being followed by alien ships seeking revenge.

The Alphans celebrate the arrival of the first child born on the Moon. The blessed event sours when the infant grows into a five-year-old child in minutes. Trying to accept him, the Alphans do not notice that little Jackie Crawford is much more than he seems. When hostile spaceships approach the base, Koenig realises, too late, that the aliens have an agent on Alpha.

In 1996, Tony Cellini commanded a high-profile space mission which ended in disaster. The sole survivor, he told an outrageous tale of a spaceship graveyard and an alien 'dragon' which devoured his crew. Believed by no one, he was left a broken man. Five years later, the truth is revealed when the runaway Moon approaches the same deadly Sargasso in space.

Encountering a derelict spaceship, the Alphans respond to an automated distress signal. On board, they discover what remains of the once-great civilisation of Daria: an elite group which maintains control of the ship and a tribe which has descended into savagery. The Alphans are appalled when they discover what measures the Darians have taken to survive.

While exploring an asteroid, the Alphans injure an alien trapped within. Bringing him to Alpha, they discover his wounds have completely healed. The indestructible Balor is a scientist whose people had discovered the secret of immortality. Balor is a psychopath, offering a drastic solution to his people's apathy; now freed of the eternal prison, he plans to spend eternity practicing the art of pain and torture, with the Alphans as his subjects.

An alien spacecraft crashlands on the Moon, its passengers refugees from a dying world. As their destination is Earth, they generously offer to take one person with them when they depart. The scheming Commissioner Simmonds takes steps to ensure that he is the lucky individual chosen, even if it means destroying Alpha.

Anonymous alien benfactors provide the wandering Moon with a breathable atmosphere. The Alphans rejoice as they realise they have a wonderful new home in their own backyard. Preparations are made to settle and begin building a new civilisation on the Moon's surface. Koenig is suspicious of the aliens' motives, wondering how long this generous gift will last.

The Alphans are visited by a bizarre spacecraft, whose request for supplies hides a deeper purpose. The ship, Gwent, is found to be sentient, the attempt of a vain alien genius to live forever. Powerful, unstable and craving companionship, Gwent intends for Koenig, Helena and Bergman to replace its aged, dying creator.

An Eagle and its crew are crushed to death by an enormous energy field in space. When one of Alpha's astronauts is possessed by the anomaly, he tells them the energy field is a living space brain, which responded to the 'threat' with antibodies Finding the Moon on a collision course with the Brain, the Alphans make plans to avoid the same fate as the Eagle.

Dan Mateo, hoping to unlock the secret of communication with plants, unleashes a killing force from the depths of his own mind. This macabre spectre seeks vengeance for Mateo's horrible death—which has not yet occurred. Bridging the span between science and the supernatural, the Alphans hope to break the cycle and exorcise the ghost without killing the man.

The Moon approaches a solar system with two planets on opposites sides of its sun. The Alphans are trapped in an interplanetary conflict when warships from both worlds trespass on the Moon to fire missiles at their opponents' planets. After taking in a refugee from a destroyed gunship, the Alphans discover they have drifted into the middle of a literal war of the sexes.

An Eagle is sent onto the surface of the planet Psychon, which has titanium, needed for repairs to the Alpha Base. It fails to return and is used by Psychon scientist Mentor as a bait with which to entice other members of the Alphan crew onto the planet. Mentor is building a computer but it will be fuelled by the living brains of humans, and he has his eye on those of the Alphan crew. Fortunately his daughter, the shape-shifting Maya, does not share her father's views and is on the side of the Alphans.

A transmission from Dr. Logan in Texas City leads the Alphans to believe that they can finally land back on Earth, though they have travelled through time and, when they touch down in Texas City, they will be in the twenty-second century. However, due to a hitch, they find themselves in a barren and hostile environment. It is Scotland in the fourteenth century where the Scots are at war with the English invaders.

A sinister woman called Zamara materializes on the base, forcing Helena and Tony to accompany her to the planet of Vega, whose natives are anything but friendly. A servant of the Vegans, known only as Number Eight, informs the two Alphans that he and his race are the natural inhabitants of the planet and that Zamara and her race are androids, who, it turns out, want the Alphans to teach them warfare.

The expansive Taybor, an inter-galactic merchant arrives from hyper-space on his ship the 'Emporium'. He is offering to sell things to the Alphans. Koenig realizes that if the Taybor sold them his space-ship, it would enable the Alphans to fly back to Earth, but the price the Taybor is asking for this transaction is Maya.

The Alphans land on a planet seemingly devoid of any human existence but being run by a group of machines. The machines explain to the visitors that their human overlords are in a state of regeneration but the chief machine, the Guardian,sees the Alphans as posing a threat and it is down to two newly regenerated females known as A and B to decide their fates.

People from Earth have landed on Moonbase Alpha, promising to take the Alphans back home. Commander Koenig, however, sees not fellow human beings, but aliens, and tries to kill some of them. Horrified, Helena stuns him with a laser gun and later, as he lies unconscious in the Medical Center, Koenig is approached by one of the aliens (for that is what they really are) who tries to smother him...