A virtual world in a scab coral (coral-like information life form) created by Eureka. Ten years have passed since the people of the virtual world appeared on this earth with the collapse. As a result of this “great fusion”, human beings in the virtual world call themselves “Green Earth”, and human beings on the old Earth call themselves “Blue Earth”, and various collisions will be repeated under the surface of the water. And Dewey Novak, a high-ranking official of the Green Earth Army, raises up with his colleagues to protect their dignity and finally puts into action a large-scale terrorist program.

It all begins with the story that was left untold—the earth-shattering incident where Renton's father disappeared. With the mysterious pilot Eureka by his side, only Adroc Thurston could undo his own mistake, sparking the event that changed everything and earned him the title of a hero. Now, ten years later, Eureka lies in critical condition as Renton leaves the crew of the Gekko. But when he finds himself in the care of his father's old friends, he has a choice to make. Either stay with the loving family he's always wanted, or earn the love he seeks.

After her father is killed by the deadly coral menace, Anemone vows to have her revenge. But the only way to fight back is from the inside.

Renton, son of scientists, and Eureka, a girl who can't live under the sun, are raised together when very young and become very attached to each other. Powerless to prevent Eureka from being taken away Renton vows to rescue her and enters the military.

Alternate non canon ending to Eureka Seven